Best Accounting Apps for Shopify in 2023
By thoroughly exploring the Shopify App store, we have gathered the apps that can help you provide a stellar customer experience by easing the process of accounting on your Shopify store. We hope this will help you in your research to pick the best app for your store! Here are the best accounting apps for Shopify that we think you should use, free or paid, based on hundreds of recommendations.

QuickBooks Sync
by:
Webgility, Inc.
Rating:
4.9
Reviews:
707
$49/month. 15-day free trial.
App highlights:
Webgility's Modern Commerce Workspace is designed to work with QuickBooks and brings together all your commerce apps, like Shopify, Amazon, WooCommerce, Etsy, and more. With Webgility, you can cut time and money spent on tedious accounting tasks and inventory updates. Let us help you get back to business so you can grow faster and win.
Your online orders, customers, sales tax, and fees are securely and automatically recorded into your accounting solution, eliminating data entry, CSV files, and spreadsheets.
Key Features:
- Eliminate Manual Bookkeeping
- Rely on Up-to-Date Financials
- Close Your Books with Ease
- Enjoy Easier Sales Tax Filing
- Make Compliance a Breeze
- Collaborate with Your Accountant

Refrens Free Invoice Generator
by:
Refrens
Rating:
4.0
Reviews:
100
Free plan available
App highlights:
Refrens is the best invoice generator as you can create unlimited invoices for unlimited clients without paying a single amount.
With just one click, you may generate a delivery challan, payment receipt, debit note, and credit note.
The invoice's fields and columns can also be changed at any time, and you have full freedom to transmit the document by email or WhatsApp or save it as a PDF and send it immediately.
Even if you use an online invoice generator, making invoices might be really difficult if you're one of the business owners who prepares bills at the end of the month. It takes time to create an invoice, send it to your client, and repeat the procedure, especially if you have a lot of invoices that need to be paid by the end of the month.
But after the sheet is published, the system will generate invoices using the bulk invoices you input using Refrens' invoice generator. You can create GST invoices, Non-GST invoices, and GST e-invoices using the bulk invoices tool.
You can focus on expanding your business while saving a tonne of time and work by using a free online invoice creator like Refrens.
Key Features:
- Free Unlimited Invoice
- Permission control
- Quick Easy Invoice
- Customization of Columns
- Email & Track Invoices
- Recurring Invoices
- Custom Formula
- Invoice Templates
- Insightful Reports
- Client Management
- Ready Data
- Free invoice generator
- International Payment gateaway
- User friendly

QuickBooks or Xero Sync
by:
A2X
Rating:
4.9
Reviews:
169
From $19/month. 30-day free trial. External charges may apply.
App highlights:
One Click Reconciled Shopify Accounting, Trusted by 1000s of stores
Get started easily using an A2X-provided standard set of accounts, customize your mapping of Shopify transaction types to your preferred ledger accounts.
A2X posts summarized journals to the Xero, QuickBooks & Sage ledger using the invoice API; this shows up in your accounting system as ‘invoices’, summarizing the transactions in your Shopify payouts.
A2X automates accounting for Shopify stores worldwide using Xero, QuickBooks & Sage. Trusted by hundreds of leading e-commerce accounting firms.
A2X for Shopify posts Shopify store sales automatically to Xero, QuickBooks, Sage & reconciles your payouts so that you know everything has been accounted for correctly. Never waste another minute manually reconciling your Shopify payouts and figuring out fees, refunds or adjustments. A2X automates that manual process, transforming what took hours into a few seconds.
Key Features:
- Built for Shopify store accountants & bookkeepers
- A2X Reconciles Perfectly
- Tidy up your books with A2X
- Shopify Plus + Shopify POS
- Works with other ecommerce platforms. Multi-channel support for the worlds most popular ecommerce platforms.
- Use a standard Shopify chart of accounts provided by A2X or set up your preferred mapping of Shopify and payment gateway transactions to your chart of accounts. A2X will monitor your Shopify Store, detect payouts, and post-sales & fees automatically to your accounting ledger.

Data Export Reports
by:
Estore Automate
Rating:
5.0
Reviews:
1428
From $10/month. 15-day free trial. Paid plan starts from $10/month
App highlights:
Automate, Customize, Summarize and Analyze any Data (2000 data fields) in your Store! Data Export Reposrts app provides fine level detail and summary of the data.
Each Shopify store is unique and its reporting needs are different. Data Export team of reporting experts will create the right custom report or dashboard. Our team has created more than 10,000 custom reports for Shopify merchants. We also believe a reporting app should not cost more than the Shopify plan itself.
Key Features:
- Sales Reports
- Tax reports
- Cost of sales report
- POS Reports
- Shopify Payout reports.
- Custom fields
- Customer Reports
- Fulfillment Reports
- Shopify Reports
- Discount Reports
- Refund Reports
- Product Reports
- Other Reports

German accounting Integration
by:
Eshop Guide
Rating:
4.6
Reviews:
68
From $10/month.
App highlights:
Streamlined accounting in no time!
Integrate your shopify store and the german lexoffice accounting software with a few easy steps and get your accounting process streamlined.
You can use any fields from the order to enhance you invoices pre- and posttexts to make them more personal.
Have your invoices ready for your tax attorney in the popular DATEV format which is supported by lexoffice.
Please note: As this app is targeting the german speaking market only, the App UI is in german.
Recommended browsers: Microsoft Edge, Google Chrome, Firefox, Safari
Missed out on keeping your accounting straight? No worries, unlock the historical import feature to get any order from your store into your lexoffice account.
Key Features:
- Booking of OSS-relevant documents (tax reform 2021)
- More security and faster loading times through Session Token
- Precisely define delivery date / service date & delivery period / service period
- Reporting of sales per customer in lexoffice
- Transfer of company name from Shopify checkout to lexoffice
- Mark Invoices due when creating them. Save another click and precious time!
- Small Business Owner? We got you covered. Create Invoices without taxes.
- Create Lexoffice invoices for your Shopify orders automatically
- Send customers their invoices via email automatically
- Booking of OSS-relevant documents (tax reform 2021)
- Sync POS orders with Lexoffice
- Exclude sales tax if you are a "Kleinunternehmer"
- Update invoices automatically for refunds or partial refunds
- Import past Shopify orders
- Individual invoice layouts – including layout designer

Flits: Customer Account Page
by:
Flits
Rating:
4.9
Reviews:
504
From $4.99/month. 30-day free trial. Additional charges may apply.
App highlights:
Beautiful customer account pages that get all your shopper data in one place. Get up, close & personal with your customers!
Enhance your store design with a highly customizable Flits customer account page. Create a more engaging experience for shoppers by bringing all their data in one easy-to-access place that makes purchasing from your store easier.
Trusted by 5000+ brands like Indie and Harper, The Man Company, Hour Glass & more.
Increase repeat purchases, turn customers into loyal brand advocates and keep them motivated to buy more with store credits. Boost customer retention and increase sales.
Save customer details, shipping and payment information in the customer account page automatically. Make it easy for a customer placing a reorder to checkout within minutes with pre-filled details, creating a positive shopping experience.
Let customers keep track of all the products they’ve purchased from your store. Used by 50+ Shopify Plus merchants. Advanced filter search for easy search based on:
Key Features:
- Summarize all your shopper data in one place - profile (birthday, gender, contact number), order history, recently viewed products, & delivery addresses. Make it easy for shoppers to purchase from your store.
- Display order history
- Show recently viewed products
- Add extra information pages (refunds, returns, exchanges, etc)
- Enable easy reorder
- Other add-ons (paid): Wishlist, Social login, Store credits, Advanced order search filter
- Make it easier for visitors to set up customer account pages with one-click login using Facebook, Twitter, Google & Amazon.
- Let them create wishlists to save their favourite products & use purchase intent to personalize marketing campaigns to make more sales.
- Customizable look to match Shopify theme
- Customers can add products to cart from wishlist
- Import existing wishlist data using CSV
- Next-gen customer rewards program w/ store credits
- Subscriber, signup, birthday, referral, product review credits & more
- Manual credits for loyal and repeat customers
- Credit on product review through Judge.me
- Increase repeat purchases w/ easy re-order
- Advanced filters for order history search
- Do more with the Flits account page
- Multi-language support
- Contact us button in order history
- Reorder (Business plan)
- Custom layout (Enterprise plan)
- Custom API
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